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2006

2005

2004

CURRENT PUBLICATIONS 2008 Publications


	Sajdel-Sulkowska, E. M., B. Lipinski, H. Windom, T. Audhyaand and W. McGinnis. 2008. Oxidative stress in autism: elevated cerebellar 3-nitrotyrosine levels. American Journal of Biochemistry and Biotechnology 4(2): 73-84.

	Townsend-Small, A, M.E. McClain, B. Hall, C. Llerena, J. L. Noruera, and J. A. Brandes. 2008. Contributions of suspended organic matter from mountain headwaters to the Amazon River: A one-year time series study in the central Peruvian Andes. Geochimica et Cosmochimica Acta. 72(3): 732-740. doi:10.1016/j.gca.2007.11.020

2007 Publications


	Brandes, J. A., A. H. Devol, and C. Deutsch. 2007. New developments in the marine nitrogen cycle. Chemical Reviews 107: 577-589.

	Brandes, J. A., E. Ingall, and D. Paterson. 2007. Characterization of minerals and organic phosphorus species in marine sediments using soft X-ray fluorescence spectromicroscopy. Marine Chemistry 103 (3-4): 250-265.

	Brouwer, M. and R. F. Lee. 2007. Response to toxic chemicals at the molecular, cellular, tissue, and organismal level. In: The Blue Crab Callinectes sapidus (V.S. Kennedy and L.E. Cronin, eds.), Maryland Sea Grant, College Park, Maryland, pp. 485-512.

	Coolen, M. J. L., B. Abbas, J. van Bleiswijk, E. C. Hopmans, M. M. M Kuypers, S. G. Wakeham, and J. S. Sinninghe Damsté. 2007. Putative ammonia-oxidizing Crenarchaeota thrive in suboxic waters of the Black Sea: A basin-wide ecological study using 16S ribosomal and functional genes and membrane lipids. Environmental Microbiology 9: 1001-1016.

	Goutx, M., S. G. Wakeham, C. Lee, M. Duflos, C. Guigue, Z. Liu, B. Moriceau, R. Sempéré, M. Tedetti, and J. Xue. 2007. Composition and degradation of marine particles with different settling velocities in the northwestern Mediterranean Sea. Limnology and Oceanography. 52: 1645-1654.

	Henjes, J., P. Assmy, C. Klaas, P. Verity, and V. Smetacek. 2007. Response of microzooplankton (protists and small copepods) to an iron-induced phytoplankton bloom in the Southern Ocean (EisenEx). Deep-Sea Research I 54: 363-384.

	Jacobsen, A., A. Larsen, J. Martinez-Martinez, , P. G. Verity, and M. E. Frischer. 2007. Susceptibility of colonies and colonial cells of Phaeocystis pouchetii (Haptophyta) to viral infection. Aquatic Microbial Ecology 48: 105-112.

	Jaeschke, A., E. C. Hopmans, S. G. Wakeham, S. Schouten and J. S. Sinninghe Damsté. 2007. The presence of ladderane lipids in the oxygen minimum zone of the Arabian Sea indicates nitrogen loss through anammox. Limnology and Oceanography 52: 780-786.

	Kattner, G., W. Hagen, R.F. Lee, R. Campbell, D. Diebel, S. Falk-Petersen, M. Graeve, B.W. Hansen, H.J. Hirche, S.H. Jónasdóttir, M.L. Madsen, P. Mayzaud, D. Müller-Navarra, P.D. Nichols, G.-A. Paffenhöfer, d. Pond H. Saito, D. Stübing, and P. Virtue. 2007. Perspectives on marine zooplankton lipids. Canadian Journal of Fisheries and Aquatic Sciences 64: 1628-1639.

	Larsen, J. B., M. E. Frischer, K. W. Ockelmann, L. J. Rasmussen, and B. W. Hansen. 2007. Temporal occurrence of planktotrophic bivalve larvae identified morphologically and by single step nested multiplex PCR. Journal of Plankton Research. 29: 423-436. doi:10.1093/plankt/fbm027

	Long, J.D., M. E. Frischer, and C. Y. Robertson. 2007. A Phaeocystis globosa bloom associated with upwelling in the subtropical South Atlantic Bight. Journal of Plankton Research. 29: 769-774. doi:10.1093/plankt/fbm058

	Muri, G. and S. G. Wakeham. 2007. Organic matter and lipids in sediments of Lake Bled (NW Slovenia): Source and effect of anoxic and oxic depositional regimes. Organic Geochemistry 37: 1644-1679.

	Niencheski, L. F. H., H. L. Windom, W. S. Moore, and R. A. Jahnke. 2007. Submarine groundwater discharge of nutrients to the ocean along a coastal lagoon barrier, southern Brazil. Marine Chemistry, 106: 546-561.

	Paffenhöfer, G.-A., B. F. Sherr, and E. B. Sherr. 2007. From small scales to the big picture: persistence mechanisms of planktonic grazers in the oligotrophic ocean. Marine Ecology 28: 243-253.

	Peck, A.M., J. R. Kucklick, and M. M. Schantz. 2007. Synthetic musk fragrances in environmental standard reference materials. Analytical and Bioanalytical Chemistry 387: 2381-2388.

	Power C., R. Feldner, B. Scanlon, M. Frischer, and J. Richardson. 2007. Bacterial source tracking in the Vernon River watershed. Proceedings of the 2007 Georgia Water Resources Conference. University of Georgia. March 27-29. Available at: http://cms.ce.gatech.edu/gwri/uploads/proceedings/2007/4.6.2.pdf

	Rampen, S. W., S. Schouten, S. G. Wakeham and J. S. Sinninghe Damsté. 2007. Seasonal and spatial variation in the sources and fluxes of long chain diols and mid-chain hydroxy methyl alkanoates in the Arabian Sea. Organic Geochemistry 38: 165-179.

	Rao, A.M.F., M.J. McCarthy, W.S. Gardner and R.A. Jahnke. 2007. Respiration and denitrification in permeable continental shelf deposits on the South Atlantic Bight: Rates of carbon and nitrogen cycling from sediment column experiments. Continental Shelf Research 27: 1801-1819.

	Rousseau, V., M.-J. Chrétiennot-Dinet, A. Jacobsen, P. Verity, and S.Whipple. 2007. The life cycle of Phaeocystis: state of knowledge and presumptive role in ecology. Biogeochemistry 83: 29-47.

	Savidge, D. K. and J. A. Austin. 2007. The Hatteras Front: August 2004 velocity and density structure. Journal of Geophysical Research - Oceans, 112 (C07006), doi:10.1029/2006JC003933.

	Savidge, D. K., C. R. Edwards, and M. Santana. 2007. Baroclinic effects and tides on the Cape Hatteras continental shelf. Journal of Geophysical Research - Oceans, 112 (C09016), doi:10.1029/2006JC003832.

	Savidge, W. B., R. A. Jahnke, J. R. Nelson, D. K. Savidge, G. Voulgaris, R. T. Short, and A. Gargett. 2007. Development of a coastal ocean benthic observatory to study sediment-water exchange processes. In: Chemical Pollution and Environmental Changes. S. Tanabe, H Takeoka, T. Isobe, Y. Nishibe, eds. Universal Academy Press, Tokyo. pp. 383-392.

	Sazhin, A. F., L. F. Artigas, J. C. Nejstgaard, and M. E. Frischer. 2007. The c olonization of two Phaeocystis species (Prymnesiophyceae) by pennate diatoms and other protists: an significant contribution to colony biomass. Biogeochemistry 83: 137-145. doi:10.1007/s10533-007-9086-2

	Stewart, G., J. K. Cochran, J. Xue, C. Lee, S. G. Wakeham, R. A. Armstrong, P. Masque, and J.C. Miquel. 2007. Exploring the connection between ²¹⁰Po and organic matter in the northwestern Mediterranean. Deep-Sea Research 54: 415-427.

	Sommerfield, C. K., A. S. Ogston, B. L. Mullenbach, D. E. Drake, C. R. Alexander, C. A. Nittrouer, J. C. Borgeld, R. A. Wheatcroft, and E.L. Leithold. 2007. Oceanic dispersal and accumulation of river sediment in Nittrouer, C.A., J. A. Austin, Jr., M. E. Field, J. H. Kravitz, J. P. M. Syvitski, and P. L. Wiberg (eds.). Continental-Margin Sedimentation: from Sediment Transport to Sequence Stratigraphy. IAS Special Publication 37, Blackwell Publishing Ltd, Oxford, 608 p.

	Townsend-Small, A., M. J. McCarthy, J. A. Brandes, L. Yang, L. Zhang, and W. S. Gardner. 2007. Stable isotopic composition of nitrate in Lake Taihu, China, and major inflow rivers. Hydrobiologia 581: 135-140.

	Townsend-Small, A., J. L. Noguera, M. E. McClain, and J. A. Brandes. 2007. Radiocarbon and stable isotope geochemistry of organic matter in the Amazon headwaters, Peruvian Andes. Global Biogeochemical Cycles 21, GB2029, doi:10.1029/2006GB002835

	Turich, C. H., K. H. Freeman, M. A. Bruns, M. Conte, A. D. Jones, and S. G. Wakeham. 2007. Lipids of marine Archaea: Patterns and provenance in the water-column and sediments Geochemica Cosmochimica Acta. 71: 3272-3291.

	Van Rijssel, M., A.-C. Alderkamp, J. C. Nejstgaard, A. F. Sazhin, and P. G. Verity. 2007. Haemolytic activity of live Phaeocystis pouchetii during mesocosm blooms. Biogeochemistry 83: 189-200.

	Verity, P. G., C. P. Brussaard, J. C. Nejstgaard, M. van Leeuwe, C. Lancelot, and L. K. Medlin. 2007. Current understanding of Phaeocystis ecology and biogeochemistry, and perspectives for future research. Biogeochemistry 83: 311-330.

	Verity, P. G., S. J. Whipple, J. C. Nejstgaard, and A.-C. Alderkamp. 2007. Colony size, cell number, carbon and nitrogen contents of Phaeocystis pouchetii from western Norway. Journal of Plankton Research 29: 359-367.

	Verity, P. G., M. J. Zirbel, and J. C. Nejstgaard. 2007. Formation of very young colonies by Phaeocystis pouchetii from western Norway. Aquatic Microbial Ecology 47: 267-274.

	Wakeham, S. G., R. Amann, K. H. Freeman, E. C. Hopmans, B. B. Jørgensen, I. F. Putnam, S. Schouten, J. S. Sinninghe Damsté, H. A. Talbot, and D. Woebken. 2007. Microbial ecology of the stratified water column of the Black Sea as revealed by a comprehensive biomarker study. Organic Geochemistry 38: 2070-2097.

	Walsh, J. P., C. R. Alexander, T. Gerber, A. R. Orpin, and B.W. Sumners. 2007. Demise of a submarine canyon? Evidence for highstand infilling on the Waipaoa River continental margin, New Zealand. Geophysical Research Letters 34: L20606, doi:10.1029/2007GL031142.

	Webster, J. W., G. A. Brook, L. B. Railsback, H. Cheng, R. L. Edwards, C. R. Alexander and P.P. Reeder. 2007. Stalagmite evidence from Belize indicating significant droughts at the time of Preclassic Abandonment, the Maya Hiatus, and the Classic Maya collapse. Palaeogeography, Palaeoclimatology, Palaeoecology 250: 1-17.

	Wheatcroft, R. A., P. L. Wiberg, C. R. Alexander, S. J. Bentley, D. E. Drake, C. K. Harris, and A. S. Ogston. 2007. Post-depositional alteration and preservation of sedimentary strata in Nittrouer, C. A., J. A. Austin, Jr., M. E. Field, J. H. Kravitz, J. P. M. Syvitski, and P. L. Wiberg (eds.). Continental-Margin Sedimentation: from Sediment Transport to Sequence Stratigraphy. IAS Special Publication 37, Blackwell Publishing Ltd, Oxford, 608 p.

	Whipple, S. J., B. C. Patten, P. G. Verity, M. E. Frischer, J. D. Long, J. C. Nejstgaard, J. T. Anderson, A. Jacobsen, A. Larsen, J. Martinez-Martinez, and S. R. Borrett. 2007. Gaining integrated understanding of Phaeocystis spp. (Prymnesiophyceae) through model-driven laboratory and mesocosm studies. Biogeochemistry 83: 293-309.

	Windom, H. L., W. Moore, and F. Niencheski. 2007. Influence of groundwater discharge through a coastal sandy barrier in Southern Brazil on sea water metal chemistry. In: A New Focus on Groundwater-Seawater Interaction (W. Sanfot, C. Langerin. M. Polemio and P. Povinea, eds.) IAH International Commission on Groundwater. XXI General Assembly, IUGG, Perugia, Italy, p. 180-188.

2006 Publications

	Alderkamp, A.-C., J. C. Nejstgaard, P. G. Verity, M. J. Zirbel, A. F. Sazhin and M. van Rijssel. 2006. Dynamics in carbohydrate composition of Phaeocystis pouchetii colonies during spring blooms in mesocosms. Journal of Sea Research 55: 169-181.

	Aretxabaleta, A., J. R. Nelson, J. O. Blanton, H. E. Seim, F. E. Werner, J. M. Bane, and R. Weisburg. 2006. Cold event in the South Atlantic Bight during summer of 2003: Anomalous hydrographic and atmospheric conditions. Journal of Geophysical Research 111: C06007, doi:10.1029/2005JC003105.

	Bianchi, T. S., M.A. Allison, E. A. Canuel, D. R. Corbett, B. A. McKee, T. Sampere, S. G. Wakeham, and E. J. Waterson. 2006. Rapid export of organic matter to the Mississippi Canyon. EOS 87: 565: 572-573.

	Blanton, J. O., F. Andrade and M. A. Ferreira. 2006. The relationship of hydrodynamics and morphology in tidal-creek and salt-marsh systems in South Carolina and Georgia. In: Changing Land Use Patterns in the Coastal Zone: Managing Environmental Quality in Rapidly Developing Regions. Kleppel, G.S., M.R. DeVoe, and M.V. Rawson (eds), Springer-Verlag, New York, USA. pp. 93-107.

	Coolen, M. J. L., A. Boere, B. Abbas, M. Baas, S. G. Wakeham, and J. J. Sinninghe Damsté. 2006. Ancient DNA derived from alkenone-biosynthesizing haptophytes and other algae in Holocene sediments from the Black Sea. Paleoceanography 21, PA 1005, doi:10.1029/2005PA001188.

	Devol, A. H., A. G. Uhlenhopp, S. W. A. Naqvi, J. A. Brandes, D. A. Jayakumar, H. Naik, S. Gaurin, L. A. Codispoti, and T. Yoshinari. 2006. Denitrification rates and excess nitrogen gas concentrations in the Arabian Sea oxygen deficient zone. Deep Sea Research Part I: Oceanographic Research Papers 53: 1533-1547.

	Dickens, A. F., J. A. Baldock, R. J. Smernik, S. G. Wakeham, T. S. Arnarson, Y. Gélinas and J. I. Hedges. 2006. Solid-state ¹³C-NMR analysis of size and density fractions of marine sediments: Insight into organic carbon sources and preservation mechanisms. Geochimica et Cosmochimica Acta. 70: 666-686.

	Frischer, M. E., R. F. Lee, M. A. Sheppard, A. Mauer, F. Rambow, M. Neumann, J. E. Brofft, T. Wizenmann, and J. M. Danforth. 2006. Evidence for a free-living life stage of the blue crab parasitic dinoflagelate, Hematodinium sp. Harmful Algae 5: 548-557.

	Frischer, M. E. and P. G. Verity. 2006. Alternatives to coliform bacteria as indicators of human impact on coastal ecosystems. In: Changing Land Use Patterns in the Coastal Zone: Managing Environmental Quality in Rapidly Developing Regions. Kleppel, G.S., M.R. DeVoe, and M.V. Rawson (eds), Springer-Verlag, New York, USA. pp. 253-284.

	Haberstroh, P. R., J. A. Brandes, Y. Gelinas, A. F. Dickens, S. Wirick, and G. Cody. 2006. Chemical composition of the graphitic black carbon fraction in riverine and marine sediments at sub-micron scales using carbon X-ray spectromicroscopy. Geochemica et Cosmochimica Acta 70: 1483-1494.

	Lee, R. F., W. Hagen and G. Kattner. 2006. Lipid storage in marine zooplankton. Marine Ecology Progress Series 307: 273-306.

	Lee, R. F. and K. A. Maruya. 2006. Chemical contaminants entering estuaries in the South Atlantic Bight as a result of current and past land use. In: Changing Land Use Patterns in the Coastal Zone: Managing Environmental Quality in Rapidly Developing Regions. Kleppel, G. S., M. R. DeVoe, and M. V. Rawson (eds), Springer-Verlag, New York, USA. pp. 206-227.

	Lin, X., S. G. Wakeham, I. F. Putnam, Y. M. Astor, M. I. Scranton, A. Y. Chistoserdov and G. T. Taylor. 2006. Comparison of vertical distributions of prokaryotic assemblages in the anoxic Cariaco Basin and Black Sea by use of fluorescence in situ hybridization. Applied and Environmental Microbiology 72: 2679-2690.

	Liu, Z., C. Lee and S. G. Wakeham. 2006. Effects of mercuric chloride and protease inhibitors on degradation of particulate organic matter from the diatom Thalassiosira pseudonana. Organic Geochemistry 37: 1003-1018.

	Loganathan, B., C. Alexander, I-L. Chien, and K. Sajwan. 06.&n Temporal trends in inorganic elements in Kentucky lake sediments. In: Trace Elements in the Environment: Biogeochemistry, Biotechnology, and Bioremediation, M. Prasad, K. Sajwan and R. Naidu (eds.), CRC Press, Florida, p. 147-154.
	Moore, W. S., J. O. Blanton, and S. B. Joye. 2006. Estimates of flushing times, submarine groundwater discharge, and nutrient fluxes to Okatee Estuary, South Carolina. Journal of Geophysical Research, 111: C09006, doi:10.1029/2005JC003041.

	Muri, G., S. G. Wakeham, and N. L. Rose. 2006. Records of atmospheric delivery of pyrolysis-derived pollutants in recent mountain lake sediments of the Julian Alps (NW Slovenia). Environmental Pollution 139: 461-468.

	Nejstgaard, J. C., M. E. Frischer, P. G. Verity, J. T. Anderson, A. Jacobsen, M. J. Zirbel, A. Larsen, J. Martinez, A. F. Sazhim, T. Walters, D. A. Bronk, S. J. Whipple, S. Borrett, B. C. Patten, and J. D. Long. 2006. Plankton development and trophic transfer in seawater enclosures with nutrients and Phaeocystis pouchetti added. Marine Ecology Progress Series 321: 99-121.

	Niencheski, L. F. H., B. Baraj, H. L. Windom and R. G. Franca. 2006. Natural background assessment and its anthropogenic contamination of Cd, Pb, Cu, Cr, Zn, Al and Fe in the sediments of the Southern area of Patos Lagoon. Journal of Coastal Research, Special Issue 39: 1-3.

	Orpin, A. R., C. Alexander, L. Carter, S. Kuehl, and J. P. Walsh. 2006. Temporal and spatial complexity in post-glacial sedimentation on the tectonically active, Poverty Bay continental margin of New Zealand. Continental Shelf Research 26: 2205-2224.

	Paffenhöfer, G.-A. 2006. Oxygen consumption in relation to motion of marine planktonic copepods. Marine Ecology Progress Series 317: 187-192.

	Paffenhöfer, G.-A. 2006. Wahrnehmen, Fressen, Fliehen - das Leben mariner Zooplankter. In: Hempel, G., Hempel, I. and Schiel, S., Editors: Faszination Meeresforschung, H.M. Hauschild Verlag, Bremen, pp.99-103.

	Paffenhöfer, G.-A. and S. Schiel. 2006. Die wichtigsten Gruppen des Zooplanktons. In: Hempel, G, Hempel, I. and Schiel, S., Editors: Faszination Meeresforschung, H.M. Hauschild Verlag, Bremen, pp.95-98.

	Paffenhöfer, G.-A., M.G. Mocchi and M.W. Tzeng. 2006. Living on the edge: feeding of subtropical open ocean copepods. Marine Ecology 27: 99-108.

	Schubert, C. J., M. J. L. Coolen, L. N. Neretin, A. Schippers, B. Abbas, E. Durisch-Kaiser, B. Wehrli, E. C. Hopmans, J. S. Sinninghe Damsté, S. Wakeham, and M. M. M. Kuypers. 2006. Aerobic and anaerobic methanotrophs in the Black Sea water column. Environmental Microbiology 8: 1844-1856. Doi:10.1111/j.1462-2920.2006.01079x.

	Schultes, S., P. G. Verity, and U. Bathmann. 2006. Copepod grazing during an iron-induced diatom bloom in the Antarctic Circumpolar Current (EisenEx): I. Feeding patterns and grazing impact on prey populations. Journal of Experimental Marine Biology and Ecology 338: 16-34.

	Seim, H.E., J. O. Blanton and S. Elston. 2006. Tidal circulation and energy dissipation in a shallow, sinuous estuary. Ocean Dynamics 56 (3-4): 360-375.

	Troedsson, C., M.E. Frischer, J.C. Nejstgaard, and E.M. Thompson. 2006. Molecular quantification of differential ingestion and particle trapping by the appendicularian, Oikopleura dioica as a function of prey size and shape. Limnology and Oceanography 52: 416-427.

	Verity, P. G., M. L. Alber, and S. B. Bricker. 2006. Development of hypoxia in well-mixed subtropical estuaries in the southeastern USA. Estuaries and Coasts 29: 665-673.

	Wakeham, S. G. and E. A. Canuel. 2006. Degradation and preservation of organic matter in marine sediments. In: The Handbook of Environmental Chemistry. (Ed.-in-Chief, O. Hutzinger). Volume 2 Series: Reactions and Processes: Bio and Chemical Markers in Environmental Chemistry (J. K. Volkman, ed). Springer-Verlag, Berlin, p. 295-321.

	Wakeham, S. G., A. P. McNichol, J. Kostka, and T. K. Pease. 2006. Natural-abundance radiocarbon as a tracer of assimilation of petroleum carbon by bacteria in salt marsh sediments. Geochimica et Cosmochimica Acta 70: 1761-1771.

	Walker, A., S. Ando, G. D. Smith and R. F. Lee. 2006. The utilization of lipovitellin during blue crab (Callinectes sapidus) embryogenesis. Comparative Biochemistry and Physiology 143B: 201-208.

	Windom, H., W. S. Moore, L. F. Niencheski and R. Jahnke. 2006. Submarine groundwater discharge: a large, previously unrecognized source of dissolved iron to the South Atlantic Ocean. Marine Chemistry 102: 252-266.

	Wuchter, C., S. Schouten, S. G. Wakeham, and J. S. Sinninghe Damste. 2006. Archaeal tetraether membrane lipid fluxes in the northeastern Pacific and the Arabian Sea: Implications for TEX86 paleothermometry. Paleoceanography 21, PA4208, doi:10.1029/2006PA001279
2005 Publications

	Alexander, C.R., R.F. Lee, D.T. Burton, and L.W. Hall, Jr. 2005. An integrated case study for evaluating the impacts of an oil refinery effluent on aquatic biota in the Delaware River: Sediment core studies. Human and Ecological Risk Assessment 11: 861–877. (HERA Ecological Risk Assessment Paper of the Year 2005)

	Allen, A.E., M.G. Booth, P.G. Verity, and M.E. Frischer. 2005. Influence of nitrate availability on the distribution and abundance of heterotrophic bacterial nitrate assimilation genes in the Barents Sea during summer. Aquatic Microbial Ecology 39: 247-255.

	Arnold, W. S., G.L. Hitchcock, M.E. Frischer, R. Wanninkhof, and P. Sheng. 2005. Dispersal of an introduced larval cohort in a coastal lagoon. Limnology and Oceanography 50: 587-597.

	Frischer, M.E., J. M. Danforth, T. F. Foy and R. Juraske. 2005. Bioluminescent bacteria as indicators of chemical contamination of coastal waters. Journal of Environmental Quality 34: 1328-1336.

	Frischer, M.E., B. R. McGrath, A. S. Hansen, P. A. Vescio, J. A. Wyllie, J. Wimbush, and S. A. Nierzwicki-Bauer. 2005. Introduction pathways, differential survival of adult and larval zebra mussels (Dreissena polymorpha), and possible management strategies, in an Adirondack lake, Lake George, NY. Lakes and Reservoirs: Research and Management 21: 391-402.

	Goff, J., J. Austin, Jr., S. Gulick, S. Nordfjord, B. Christensen, C. Sommerfield, H. Olsen, and C. Alexander. 2005. Recent and modern marine erosion on the New Jersey outer shelf. Marine Geology 216: 275-296.

	Gulick, S., J. Goff, , J. Austin, Jr., C. Alexander, Jr., S. Nordfjord, and C. Fulthorpe. 2005. Basal inflection-controlled shelf-edge wedges off New Jersey track sea-level fall. Geology 33: 429-432.

	Hu, C., J.R. Nelson, E. Johns, Z. Chen, R.H. Weisberg, and F.E. Muller-Karger. 2005. Mississippi River water in the Florida Straits and in the Gulf Stream off Georgia in summer 2004. Geophysical Research Letters, 32, No. 14, L14606, doi:10.1029/2005GL02294.

	Jahnke, R.A. 2005. Transport processes and organic matter cycling in coastal sediments. In: The Sea, volume 13; The Global Coastal Ocean Multiscale Interdisciplinary Processes. A.R. Robinson and K.H. Brink (eds.) Harvard University Press, pp.163-191.

	Jahnke, R., M. Richards, J. Nelson, C. Robertson, A. Rao, and D. Jahnke. 2005. Organic matter remineralization and porewater exchange rates in permeable South Atlantic Bight continental shelf sediments. Continental Shelf Research 25: 1433-1452.

	Kendall, M.S., O.P. Jensen, C. Alexander, D. Field, G. McFall, R. Bohne, and M.E. Monaco. 2005. Benthic mapping using sonar, video transects, and an innovative approach to accuracy assessment: A characterization of bottom features in the Georgia Bight. Journal of Coastal Research 21: 1154-1165.

	Larsen, J. B., M. E. Frischer, L. J. Rasmussen, and B. W. Hansen. 2005. Single-step nested multiplex PCR to differentiate between various bivalve larvae. Marine Biology 146: 1119-1129.

	Lee, R. F. and J. W. Anderson. 2005. Significance of cytochrome P450 system responses and levels of bile fluorescent aromatic compounds in marine wildlife following oil spills. Marine Pollution Bulletin 50: 705-723.

	Lee, R. F., A. Walker and D. J. Reish. Characterization of lipovitellin in eggs of the polychaete Neanthes arenaceodentata. Comparative Biochemistry and Physiology 140B: 381-386.

	Lohrenz, S. E. and P. G. Verity. 2005. Chapter 6, Regional Oceanography: Southeastern United States and Gulf of Mexico (2,W), in The Sea, Vol. 14A, The Global Coastal Ocean: Interdisciplinary Regional Studies and Syntheses, edited by A. R. Robinson and K. H. Brink, pp. 169-223, Harvard University Press, Cambridge.

	Paffenhöfer, G.-A. and M. Koster. 2005. Digestion of diatoms by planktonic copepods and doliolids. Marine Ecology Progress Series 297: 303-310.

	Paffenhöfer, G.-A., A. Ianora, A. Miralto, J.T. Turner, G.S. Kleppel, M. Ribera d'Alcalà, R. Casotti, G.S. Caldwell, G. Pohnert, A. Fontana, D. Müller-Navarra, S. Jónasdóttir, V. Armbrust, U. Båmstedt, S. Ban, M.G. Bentley, M. Boersma, M. Bundy, I. Buttino, A. Calbet, F. Carlotti, Y. Carotenuto, G. d'Ippolito, B. Frost, C. Guisande, W. Lampert, R.F. Lee, S. Mazza, M.G. Mazzocchi, J.C. Nejstgaard, S.A. Poulet, G. Ramano. V. Smetacek, S. Uye, S. Wakeham, S. Watson, and T. Wichard. 2005. Colloquium on diatom - copepod interactions. Marine Ecology Progress Series 286: 293-305.


	Peterson, M.L., S. G. Wakeham, C. Lee, M. A. Askea and J. C. Miquel. Novel techniques for collection of sinking particles in the ocean and determining their settling rates. 2005. Limnology and Oceanography Methods 3: 520-532.

	Robinson, A. R., K. H. Brink, H. Ducklow, R. A. Jahnke, and B. Rothschild. 2005. Overview and synthesis of dynamical processes and physical-biological-chemical-sedimentological interactions. In: The Sea (Vol. 13), A. R. Robinson and K. H. Brink, (eds.) Harvard University Press, 1033pp.

	Savidge, W.B., and N.E. Blair. 2005. Intramolecular carbon isotopic composition of monosodium glutamate: biochemical pathways and product source identification. Journal of Agricultural and Food Chemistry 53: 197-201.

	Townsend-Small, A., J. A. Brandes, and M.E. McClain. 2005. Contributions of carbon and nitrogen from the Andes Mountains to the Amazon River: Evidence from an elevational gradient of soils, plants, and river material. Limnology and Oceanography 50(2): 672-685.

	Wenner, E., D. Knott, C. Barans, S. Wilde, J. Blanton, and J. Amft. 2005. Key factors influencing the transport of white shrimp (Litopenaeus setiferus) post-larvae into the Ossabaw Sound system, Georgia, USA. Fisheries Oceanography 14(3): 175-194.

	Whipple, S.J., B.C. Patten and P.G. Verity. 2005. Life cycle of the marine alga Phaeocystis: A conceptual model to summarize literature and guide research. Journal of Marine Systems 57: 83-110.

	Whipple, S.J., S. Borrett, B.C. Patten, and P.G. Verity. 2005. Colony growth and evidence for colony multiplication in Phaeocystis pouchetii (Prymnesiophyceae) isolated from mesocosm blooms. Journal of Plankton Research 27: 495-501.

	Wiggert, J. D., A. E. G. Haskell, G.-A. Paffenhöfer, E. E. Hofmann and J. M. Klinck. The role of feeding behavior in sustaining copepod populations in the tropical ocean. Journal of Plankton Research 27: 1013-1031.

	Wuchter, C., S. Schouten, S. G. Wakeham and J. S. Sinninghe Damsté. (2005) Temporal and spatial variation in tetraether membrane lipids of marine crenarchaeota in particulate organic matter: Implications for TEX_86 paleothermometry. Paleoceanography 20, PA3013, doi:10,1029/2004PA001110.

2004 Publications

	Armstrong, E., J. Granger, E. L. Mann, and N. M. Price. Outer-membrane siderophore receptors of heterotrophic oceanic bacteria. Limnology and Oceanography 49(2): 579-587.

	Bender, J., R. Lee, M. Sheppard, K. Brinkley, P. Phillips, Y. Yeboah, and R.C. Wah. 2004. A waste effluent treatment system based on microbial mats for black sea bass Centropristis striata recycled-water mariculture. Aquacultural Engineering 31: 73-82.

	Brandes, J.A., C. Lee, S. Wakeham, M. Peterson, C. Jacobsen, S. Wirick, and G. Cody. 2004. Examining marine particulate organic matter at sub-micron scales using scanning transmission X-ray microscopy and carbon X-ray absorption near edge structure spectroscopy. Marine Chemistry 92: 107-121.

	Dickens, A.F., Y. Gélinas, C.A. Masiello, S.G. Wakeham, and J.I. Hedges. 2004. Reburial of fossil organic carbon in marine sediments. Nature 427: 336-339.

	Furukawa, Y., A. Smith, J. Kostka, J. Watkins, and C. Alexander. 2004. Quantification of macrobenthic effects on diagenesis using a multicomponent inverse model in salt marsh sediments. Limnology and Oceanography 49: 2058-2072.

	Hook, S.E., and R.F. Lee. 2004. Genotoxicant induced DNA damage and repair in early and late developmental stages of the grass shrimp Paleomonetes pugio embryo as measured by the comet assay. Aquatic Toxicology 66: 1-14.

	Hook, S.E., and R.F. Lee. 2004. Interactive effects of UV, benzo[α]pyrene, and cadmium on DNA damage and repair in embryos of the grass shrimp Paleomonetes pugio. Marine Environmental Research 58: 735-739.

	Ingalls, A.E, R.C. Aller, C. Lee, and S.G. Wakeham. 2004. Organic matter diagenesis in shallow water carbonate sediments. Geochimica et Cosmochimica Acta 68: 4363-4379.

	Jahnke, R.A., and D.B. Jahnke. 2004. Calcium carbonate dissolution in deep sea sediments: reconciling microelectrode, pore water and benthic flux chamber results. Geochimica et Cosmochimica Acta 68: 47-59.

	Jiang, H., and G.-A. Paffenhöfer. 2004. Relation of behavior of copepod juveniles to potential predation by omnivorous copepods: an empirical-modeling study. Marine Ecology Progress Series 278: 225-239.

	Lee, C., S.G. Wakeham, and C. Arnosti. 2004. Particulate organic matter in the sea: the composition conundrum. Ambio 33: 565-575.

	Lee, C., S. G. Wakeham, and R. H. Benner. 2004. (Editors) Symposium on new approaches in marine organic biogeochemistry: a tribute to the life and science of John I. Hedges. Marine Chemistry 92: 1-3.
	Lee, R.F., and M.E. Frischer. 2004. The decline of the blue crab. American Scientist 92: 548-553.

	Lee, R.F., K.A. Maruya, and K. Bulski. 2004. Exposure of grass shrimp to sediments receiving highway runoff: Effects on reproduction and DNA. Marine Environmental Research 58: 713-717.


	Massé, G., S.T. Belt, W.G. Allard, C.A. Lewis, S.G. Wakeham, and S.J. Rowland. 2004. Occurrence of novel monocyclic alkenes from diatoms in marine particulate matter and sediments. Organic Geochemistry 35: 813-822.

	Muri, G., S.G. Wakeham, T.K. Pease, and J. Faganeli. 2004. Evaluation of lipid biomarkers as indicators of changes in organic matter delivery to sediments from Lake Planina, a remote mountain lake in NW Slovenia. Organic Geochemistry 35: 1083-1093.

	Queiroga, H., and J. Blanton. 2004. Interactions between behaviour and physical forcing in the control of horizontal transport of decapod larvae. In: Advances in Marine Biology 47 pp. 107-214.

	Rao, A.M.F., and R.A. Jahnke. 2004. Quantifying porewater exchange across the sediment-water interface in the deep sea with in situ tracer studies. Limnology and Oceanography Methods 2: 75-90.

	Ruppe, S., A. Neumann, E. Braekevelt, G.T. Tomy, G.A. Stern, K.A. Maruya, and W. Vetter. 2004. Anaerobic transformation of compounds of technical toxaphene. 2. Fate of compounds lacking geminal chlorine atoms. Environmental Toxicology and Chemistry 23: 591-598.

	Savidge, D. K., Gulf Stream Meander propagation past Cape Hatteras. 2004. Journal of Physical Oceanography 34: 2073-2085.

	Savidge, W.B., and N.E. Blair. 2004. Patterns of intramolecular isotopic heterogeneity within the amino acids of autotrophs and heterotrophs. Oecologia 139: 178-189.

	Savidge, W.B., and N.E. Blair. 2004. Seasonal and within-plant gradients in the intramolecular carbon isotopic composition of amino acids of Spartina alterniflora. Journal of Experimental Marine Biology and Ecology 308: 151-167.

	Sharp, J.H., A.Y. Beauregard, D. Burdige, G. Cauwet, S.E. Curless, R. Lauck, K. Nagel, H. Ogawa, A.E. Parker, O. Primm, M. Pujo-Pay, W.B. Savidge, S. Seitzinger, G. Spyres, and R. Styles. 2004. A direct instrument comparison for measurement of total dissolved nitrogen in seawater. Marine Chemistry 84: 181-193.

	Wakeham, S.G. 2004. Reading the molecular Rosetta Stone: molecular clues on the origin and diagenesis of organic matter. Marine Chemistry 92: 235-237.

	Wakeham, S.G., E.C. Hopmans, S. Schouten, and J.S. Sinninghe Damsté. 2004. Archaeal lipids and anaerobic oxidation of methane in euxinic water columns: a comparative study of the Black Sea and Cariaco Basin. Chemical Geology 205: 427-442.

	Wakeham, S.G., J. Forrest, C.A. Masiello, Y. Gélinas, C.R. Alexander, and P.R. Leavitt. 2004. Hydrocarbons in Lake Washington sediments. A 25-year retrospective in an urban lake. Environmental Science & Technology 38: 431-439.

	Winston, G. W., D. G. E. Lemaire and R. F. Lee. 2004. Antioxidants and total oxyradical scavenging capacity during grass shrimp, Palaemonetes pugio, embryogenesis. Comparative Biochemistry Physiology 139C: 281-288.

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